Monday, August 31, 2015

Sangamo IVPR approach for Hemophilia will avoid problems described in this approach

Hemophilia Gene Therapy: Caught Between a Cure and an Immune Response

http://www.nature.com/mt/journal/v23/n9/full/mt2015135a.html

Roland W. Herzog
Editor-in-Chief, Molecular Therapy—Methods & Clinical Development
Gene therapy for the X-linked bleeding disorder hemophilia B—factor IX (FIX) deficiency—by means of in vivo gene transfer with adeno-associated viral (AAV) vectors has been in clinical trials for the past 16 years, cycling between partial successes in the clinic and further development in the laboratory. At the recent World Congress of the International Society on Thrombosis and Haemostasis (Toronto, Canada, June 2015), Paul Monahan and colleagues presented data from a patient who has achieved FIX levels of 20–25% that have been sustained for more than 6 months since undergoing hepatic gene transfer with an AAV8 vector (administered via peripheral vein). This result, representing another milestone in gene therapy for hemophilia, was in part accomplished by incorporating a missense mutation into a codon-optimized FIX sequence, which improves FIX enzymatic activity by 5- to 10-fold. However, similarly treated patients lost therapeutic expression because of immune responses to virally transduced hepatocytes or for other, yet-to-be-determined reasons.
In the past decade, gene therapy for hemophilia B has focused on expression and secretion of FIX by hepatocytes into the circulation. Sustained correction from severe to mild hemophilia (>5% of normal coagulation activity) using an AAV serotype 8 vector has been documented in recent years. Further improvements so as to sustain levels of >10% would essentially represent a cure for most patients, preventing spontaneous bleeds and limiting the need for intravenous factor infusions to surgery and treatment of severe trauma. The ”Padua” mutation was discovered when analyzing a case of X-linked juvenile thrombophilia, and has since been rigorously tested for improved gene therapy in murine and canine models of hemophilia B. For the clinical trial sponsored by Baxalta and conducted by Monahan and colleagues at the University of North Carolina–Chapel Hill, an FIX expression cassette was incorporated into a self-complementary AAV (scAAV), a vector system initially developed by McCarty and Samulski to eliminate the need for second-strand synthesis, which limits traditional AAV vectors. Seven patients have been treated in the trial thus far, and the results vary widely.
It has been known for 10 years that the immune system may limit the duration of therapeutic gene expression from AAV vectors in the human liver. The discovery of a hepatotoxic CD8+ T-cell response against AAV capsid was surprising at the time because none of the animal models had shown anything similar. Several articles in Molecular Therapy have since uncovered differences between murine and human, and even human and nonhuman primate, T-cell responses to capsid. More recently, a murine model was developed that mimics transaminitis and loss of FIX expression after ex vivo expansion followed by adoptive transfer of capsid-specific CD8+ T cells. At the highest vector dose in the current trial by Monahan et al. (3 × 1012 vector genomes/kg), both patients showed even higher levels of expression than those mentioned above (up to >50% of normal) but subsequently lost expression concomitant with transaminitis and a T-cell response to capsid. It remains remarkable that these responses may emerge two months after vector administration. No immune response against FIX (or the Padua variant) was found. In efforts to counter the destructive T cells, elevation of liver enzyme levels has previously been established as a biomarker that warrants initiation of immune suppression, and the steroid drug prednisone has been successfully applied to stop the T-cell response to AAV8 in its tracks and preserve FIX expression.
Although the same strategy was adopted in the trial by Monahan et al., efforts to preserve gene expression upon onset of transaminitis were unsuccessful. One drawback to this approach is that drug administration must be initiated very soon after the first signs of hepatotoxicity. Additionally, transaminitis may not be a sufficiently sensitive biomarker, and steroid drugs may not be effective against T-cell responses in all patients. Hence, the field continues to wrestle with the question of whether a prophylactic immunosuppression protocol should be incorporated into hepatic AAV gene transfer, and how such a regimen should be designed. Preclinical studies suggest a requirement for innate immune sensing of the AAV genome by Toll-like receptor 9 (TLR9) for CD8+ T-cell activation. Development of vectors devoid of TLR9-activating CpG motifs has been proposed. Using scAAV vectors may, on the one hand, increase or accelerate responses because of stronger TLR9 signaling, which, on the other hand, could be an advantage by providing a more defined target for immune suppression. No changes in liver enzymes or capsid-specific T cells were detected at a mid-dose of 1 × 1012 vector genomes/kg, reinforcing the conclusion that the T-cell response is vector dose–dependent. However, differences in vector production, purification, design (such as promoter), and measurement of titers complicate a direct comparison between trials. Interestingly, the three patients treated with the mid-dose experienced very diverse outcomes.
As mentioned, one patient continues to express at curative levels of >20%, whereas the others showed therapeutic levels initially but then spontaneously lost expression in the absence of any evidence for an immune response. Although minor changes in persistence of gene transfer or expression may have been amplified by the highly active Padua mutation, this observation remains unsettling because it adds another layer of complexity. Hence, AAV gene transfer to the human liver is caught somewhere between a cure, cellular immune responses, and additional factors that have yet to be determined.

Nature Methods: Functional footprinting of regulatory DNA

Journal name:
Nature Methods
Year published:
DOI:
doi:10.1038/nmeth.3554
Received
Accepted  30 July 2015
Published online

Saturday, August 29, 2015

Sangamo Short Interest (SGMO)

Sangamo Short Interest (SGMO)
DATE                                   SHORT INTEREST
8/14/15                                  9,488,474
7/31/15                                  9,207,150
7/15/15                                  9,205,202
6/30/15                                  9,387,951
6/15/15                                  9,393,825
5/29/15                                  8,938,987
5/15/15                                  8,668,559
4/30/15                                  8,198,983
4/15/15                                  8,050,307
3/31/15                                  8,285,803
3/13/15                                  8,441,291
2/27/15                                  8,939,000
2/13/15                                  9,268,065
1/30/15                                  9,082,814
1/15/15                                  9,387,913

Days to cover as of 8/14/15 is 9.15

Thursday, August 27, 2015

Dow Agro Enters into Rice Collaboration Agreement in China - Royalty Free????

Royalty free research and commercialization license for EXZACT with ICS-CAAS.

NYSE:
DOW
  
BEIJING--(BUSINESS WIRE)--Dow AgroSciences LLC, a wholly owned subsidiary of The Dow Chemical Company (NYSE: DOW), has entered into a collaboration agreement with the Institute of Crop Sciences of the Chinese Academy of Agricultural Sciences (ICS-CAAS). Under the agreement, Dow AgroSciences grants ICS-CAAS a royalty-free, non-transferable research and commercialization license for its proprietary EXZACT™ Precision Genome Editing Technology to be used in rice in China. Dow AgroSciences and ICS-CAAS scientists will collaboratively develop an industry-leading rice genome editing technology platform.
The EXZACT Precision Genome Editing Platform will enable ICS-CAAS scientists to capitalize on their significant investment and technical expertise in rice genomics, transcriptomics, proteomics, and cell biology as well as accelerate integration of the scientific knowledge generated in rice to rapidly develop valuable products for China. Dow AgroSciences has developed the EXZACT Precision Technology platform under an exclusive license and collaboration agreement in plants with Sangamo BioSciences, Inc. Dow AgroSciences and ICS-CAAS scientists will work together to make sure that the expertise and strengths of both parties are best combined to accelerate rice research and product development in China. This is part of Dow AgroSciences’ commitment to providing innovative and sustainable solutions to bolster food security and food safety in China.
ICS-CAAS indicates this collaboration is a milestone, which will accelerate the development of rice genome editing technology platform in China. It will have significant impact in developing new agronomic traits in rice.
“Our collaboration with ICS-CAAS, a world-renowned agricultural science research organization, is one with great promise,” said Tim Hassinger, President and CEO of Dow AgroSciences. “We have a long-term commitment in China as a strategic partner for agricultural sustainability and best practices. The EXZACT Precision Technology collaboration with CAAS is a strong example of this commitment, which will significantly enable Chinese scientists to improve rice research and product development, thus benefiting China’s long term food security.”
http://newsroom.dowagro.com/press-release/dow-agrosciences-and-ics-caas-partner-accelerate-rice-research-and-product-development

Friday, August 21, 2015

Blood Journal | In vivo genome editing of the albumin locus as a platform for protein replacement therapy

http://www.bloodjournal.org/content/early/2015/08/20/blood-2014-12-615492

Key points


  • AAV and ZFN mediated targeting of albumin locus corrects disease phenotype in mouse models of hemophilia A and B.
  • Robust expression from the albumin locus provides a versatile platform for liver directed protein replacement therapy.

Abstract

Site specific genome editing provides a promising approach for achieving long-term, stable therapeutic gene expression. Genome editing has been successfully applied in a variety of preclinical models, generally focused on targeting of the diseased locus itself; however, limited targeting efficiency or insufficient expression from the endogenous promoter may impede the translation of these approaches, particularly if the desired editing event does not confer a selective growth advantage. Here we report a general strategy for liver-directed protein replacement therapies that addresses these issues: Zinc Finger Nuclease (ZFN)-mediated site-specific integration of therapeutic transgenes within the albumin gene. Employing adeno-associated viral vector (AAV) delivery in vivo, we achieved long-term expression of human factors VIII and IX (hF.VIII and hF.IX) in mouse models of hemophilia A and B at therapeutic levels. Using the same targeting reagents in wild type mice, we expressed lysosomal enzymes that are deficient in Fabry and Gaucher diseases, as well as in Hurler and Hunter syndromes. The establishment of a universal nuclease-based platform for secreted protein production would represent a critical advance in the development of safe, permanent, and functional cures for diverse genetic and non-genetic diseases.
  • Submitted December 3, 2014.
  • Accepted August 8, 2015.

The Economist: Genome Editing Review with Sangamo (SGMO) mention

Heartbreaking discussion of MPS-3 patient really clarifies the need for SGMO to get their program into the clinic. Also spends most of the article talking CRISPR's.
Sangamo Excerpt:

The easiest sorts of gene therapy will be those that can be done outside the body—ex vivo, in lab speak. The appeal of ex vivo work is the level of control; cells can be extracted, have their genes manipulated, and have their new genes tested before being put back. To see the sort of things that this makes possible take a look at the work being done by Sangamo Biosciences, based in Richmond, California, which has been working for a decade on an earlier, more cumbersome gene-editing technology that makes use of what are known as “zinc fingers”. It is trying to apply that technology to beta-thalassaemia, sickle-cell disease, haemophilia and HIV infection.
In clinical trials of its HIV treatment, Sangamo takes the immune cells that the virus infects out of the patient’s bloodstream and edits in a mutation that makes them highly resistant to infection. It then grows up a large number of the edited cells and infuses them back into the patient, where it is hoped they will flourish. A similar sort of approach can also be used in blood disorders such as beta-thalassaemia and sickle-cell disease which are caused by mutations in the globin gene. The idea is to extract blood stem cells from bone marrow, edit them so as to switch on the production of fetal haemoglobin (which the body stops producing shortly after birth, even if it cannot make the adult stuff) and return the stem cells to the body. It would be like a bone-marrow transplant—except that since the new genetically improved cells come from the patient’s own body there is no danger of rejection.

http://www.economist.com/news/briefing/21661799-it-now-easy-edit-genomes-plants-animals-and-humans-age-red-pen

Tuesday, August 18, 2015

Xconomy - Excellent Review of Competitive Landscape in Sickle Cell

http://www.xconomy.com/national/2015/08/18/100-years-but-only-one-drug-sickle-cell-patients-wait-for-help/

Sangamo Excerpt:
Another gene editing program for sickle cell is in the works from Sangamo Biosciences (NASDAQ: SGMO) of Richmond, CA. Sometime in the second half of 2016, Sangamo and its development partner Biogen (NASDAQ: BIIB) will ask FDA permission to start human trials with its program.
To do its gene editing, Sangamo uses a system called zinc finger proteins, which it owns. No one else can use zinc fingers without a license, and Sangamo, with 20 years of development under its belt, is the only company to advance a gene-editing product into human trials, for HIV.

CRISPR Excerpt:
CRISPR/Cas9 hasn’t been around as long as zinc finger proteins, and the technology has a major hurdle to overcome: making sure the molecular “scissors” it uses are making DNA cuts in the right places. Right now, the methods used to detect off-target cuts simply aren’t sophisticated enough. And all it takes is one cut in the wrong place to trigger a tragic unintended consequence. The fear dates back to gene therapy experiments fifteen years ago, in which genes meant to heal kids with severe combined immunodeficiency—the so-called “bubble boy disease”—inserted themselves in the wrong place and triggered cancer. Being more precise with gene editing tools, like CRISPR/Cas9, is still a goal, not a reality.
“Our ability to find off targets isn’t great right now,” says Corn. “No matter how bullish you are, the field [of gene therapy] has been bitten by kids getting leukemia. That should keep everyone in the hematopoietic field up at night.”